UMF

Addressing the complex exposome profile in hormone-dependent cancers of the breast and prostate and its influence on tumoral genome

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Project Title: Addressing the complex exposome profile in hormone-dependent cancers of the breast and prostate and its influence on tumoral genome

Project Acronym: ACHILLE

Final Registration Code: PN-III-P4-ID-PCE-2016-0795

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Project Executive Summary: Nowadays, it is generally accepted that cancer is promoted by the presence of certain environmental factors defined globally as exposome, affecting our health status in a negative manner. The carcinogenic mechanism consists in the synergetic action of genetic factors and exposome related factors. The hormone-depended cancers of breast and prostate continue to represents a major public health problem, whose evolution and outcome is affected by the exposome. 
MicroRNAs (miRNAs) are presented as potential exposome related biomarkers. MiRNAs are short sequences of about 21 nucleotides that do not encode proteins. They regulate the expression of genes. The microRNAs are present in human plasma and tissues, interfering with various endogenous molecular pathways.

Presently, there is a gap in the knowledge concerning the association between exposome and cancer risk in the case of breast and prostate cancer in Romania. The same situation is also present at a global scale. Our project is focused on the identification and integration of exposome related miRNA signature patterns as biomarkers for exposome aggressiveness, to predict the genotoxic risk for healthy individuals and to identify different molecular subtypes for these two hormone-dependent cancers (breast and prostate).  Therefore, in the context of precision medicine, we intent to characterize specific risk factors related to hormone dependency, based on the miRNA genomic and transcriptomic background and correlate it with the environmental exposure. We then want to transform this integrated signature in a new panel of markers with diagnostic and prognostic value for personalized guidance.

Project Duration: 30 months

Total Funding Requested: 222.222,22 EUR

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Facility:

The Research Center for Functional Genomic, Biomedicine and Translational Medicine (Genomic Center), the concept of the state-of-art research center, has research laboratories and core facilities able to develop projects related to human diseases, at molecular and cellular level, covering the areas: Nucleic acids extraction – quality and quantity control, Microarray, Next generation sequencing, Proteomics and mass spectrometry, RT-PCR, Cell culture and cell sorting, Flowcytometry, Recombinant DNA, Bioinformatics, Pathology and microscopy, Storage facilities for frozen biological samples.

The Research Center for Advanced Medicine (Medfuture) promotes the development and application of new technologies in the field of molecular and functional imaging, proteomics, metabolomics and advanced experimental medicine for personalized therapies, as well as clinical studies for pharmacogenomics and pharmacoproteomics that will provide new concepts and approaches and will generate the necessary database for the design of specific therapies based on the identification of molecular mechanisms and triggers in the alteration of the genome and the achievement of the specific fenome in different pathologies.

Objectives:

Identification and integration of miRNAs genomic and transcriptomics patterns as exposome biomarkers for predicting the genotoxic risk for healthy individuals together with the identification of different molecular subtypes for these two hormonedependent cancers (breast and prostate) with diagnostic/prognostic value. Therefore, in the context of precision medicine, we intent to characterize specific risk factors for breast and prostate cancers, based on the miRNAs patterns and to correlate them with the environmental exposure, in order to transform this integrated signature in a new panel of markers with clinical application.

Specific objectives:

1.To define a specific miRNAs molecular signature (at genomic and transcriptomics level) related to exposome exposure in breast and prostate two hormone dependent cancers

2.To identify the determinants of the evaluated exposome markers based on the socio-professional and environmental factors evaluated (tobacco and alcohol consumption, dietary habits and other possible sources). Identification of the specific genotoxic signatures, by correlating the environmental factors with molecular alterations, especially related to hormone dependency.

3. To explore the complex mechanisms and therapeutic insights by integration of miRNA patterns related with the prostate and breast hormonal features, based on functional studies using in vitro models.

4.To use the specific molecular signature related to exposome exposure for hormone dependent breast and prostate cancers and establish its modulation by the environmental factors in control groups and cancer patients, and its validation as prototype for a possible prediction diagnostic test. Recently, the ‘exposome’ was incriminated as collateral factor involved in the activation and progression of hormone-dependent cancers.

The project novelty is focused on a better understanding of risk factors that are associated with other alterations at genomic and transcriptomics level, particularly in the case of miRNAs and their targeted genes, leading to the identification of risk biomarkers for the predisposition to cancer, but also for diagnosis and prognostic.

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Estimated results:

By developing novel screening tests for early diagnosis of patients with breast and prostate cancer risk and based on the exposome signature, it is possible to develop an optimal and personalized therapeutic plan. All the results obtained will translate into improved genomic exposome related counseling and therapeutic interventions in Romania, providing key tools for additionally refining coherent prevention biomarkers and therapeutic schemes for patients during the timeline of cancer treatment and disease trajectory. The results obtained in the proposed project could help to develop new diagnostic tools and therapeutic models for personalized therapies based on the exposome related miRNAs associated signature for patients with breast and prostate cancers. This will also have an impact on the economic sector. This would imply the development of a new sector for providing all the reagents and devices for these types of evaluation that incorporate the relevant markers for the exposome related miRNAs that can be commercialized by technological or pharmaceutical companies.

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List of publications:

1. Genetic alterations in sporadic triple negative breast cancer. Pop LA, Cojocneanu-Petric RM, Pileczki V, Morar-Bolba G, Irimie A, Lazar V, Lombardo C, Paradiso A, Berindan-Neagoe I., Breast. 2018 Apr;38:30-38. doi: 10.1016/j.breast.2017.11.006. Epub 2017 Dec 5.     

2. Restoring the p53 'Guardian' Phenotype in p53-Deficient Tumor Cells with CRISPR/Cas9.,Chira S, Gulei D, Hajitou A, Berindan-Neagoe I., Trends Biotechnol. 2018 Jul;36(7):653-660. doi: 10.1016/j.tibtech.2018.01.014. Epub 2018 Feb 22. Review.     

3. The silent healer: miR-205-5p up-regulation inhibits epithelial to mesenchymal transition in colon cancer cells by indirectly up-regulating E-cadherin expression. Gulei D, Magdo L, Jurj A, Raduly L, Cojocneanu-Petric R, Moldovan A, Moldovan C, Florea A, Pasca S, Pop LA, Moisoiu V, Budisan L, Pop-Bica C, Ciocan C, Buiga R, Muresan MS, Stiufiuc R, Ionescu C, Berindan-Neagoe I., Cell Death Dis. 2018 Jan 19;9(2):66. doi: 10.1038/s41419-017-0102-8.